J4_9H55_003

3D structure

PDB id

9H55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and TFB1M (state N3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAAUAG*CCCUAAACCUCA*UC

Length

23 nucleotides

Bulged bases

9H55|1|A|A|942, 9H55|1|A|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H55_003 not in the Motif Atlas

Homologous match to J4_6CZR_013

Geometric discrepancy: 0.2364

The information below is about J4_6CZR_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.5

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9H55|1|A|G|941
9H55|1|A|A|942
9H55|1|A|G|943
*
9H55|1|A|C|1052
9H55|1|A|A|1053
9H55|1|A|A|1054
9H55|1|A|U|1055
9H55|1|A|A|1056
9H55|1|A|G|1057
*
9H55|1|A|C|1098
9H55|1|A|C|1099
9H55|1|A|C|1100
9H55|1|A|U|1101
9H55|1|A|A|1102
9H55|1|A|A|1103
9H55|1|A|A|1104
9H55|1|A|C|1105
9H55|1|A|C|1106
9H55|1|A|U|1107
9H55|1|A|C|1108
9H55|1|A|A|1109
*
9H55|1|A|U|1132
9H55|1|A|C|1133

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain L

28S ribosomal protein S15, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial

Chain Q

Small ribosomal subunit protein bS21m

Chain T

28S ribosomal protein S25, mitochondrial