J4_9H6Y_002

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9H6Y|1|2|G|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|C|98
9H6Y|1|2|A|99
9H6Y|1|2|U|100
9H6Y|1|2|U|101
9H6Y|1|2|A|102
9H6Y|1|2|A|103
9H6Y|1|2|A|104
9H6Y|1|2|U|105
9H6Y|1|2|C|106
*
9H6Y|1|2|G|345
9H6Y|1|2|C|346
9H6Y|1|2|C|347
*
9H6Y|1|2|G|395
9H6Y|1|2|U|396
9H6Y|1|2|G|397
9H6Y|1|2|A|398
9H6Y|1|2|C|399
*
9H6Y|1|2|G|421
9H6Y|1|2|G|422

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17

Chain Z

Small ribosomal subunit protein uS12