J4_9H74_002

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9H74|1|2|G|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H74|1|2|C|98
9H74|1|2|A|99
9H74|1|2|U|100
9H74|1|2|U|101
9H74|1|2|A|102
9H74|1|2|A|103
9H74|1|2|A|104
9H74|1|2|U|105
9H74|1|2|C|106
*
9H74|1|2|G|345
9H74|1|2|C|346
9H74|1|2|C|347
*
9H74|1|2|G|395
9H74|1|2|U|396
9H74|1|2|G|397
9H74|1|2|A|398
9H74|1|2|C|399
*
9H74|1|2|G|421
9H74|1|2|G|422

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

Small ribosomal subunit protein eS8

Chain N

40S ribosomal protein S11

Chain Z

40S ribosomal protein S23