J4_9HA4_001

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HA4|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA4_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2654

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HA4|1|A|C|268
9HA4|1|A|C|269
*
9HA4|1|A|G|370
9HA4|1|A|A|371
9HA4|1|A|G|372
9HA4|1|A|U|373
9HA4|1|A|A|374
9HA4|1|A|G|375
*
9HA4|1|A|U|399
9HA4|1|A|G|400
9HA4|1|A|A|401
9HA4|1|A|A|402
9HA4|1|A|U|403
9HA4|1|A|A|404
9HA4|1|A|U|405
9HA4|1|A|G|406
*
9HA4|1|A|C|421
9HA4|1|A|A|422
9HA4|1|A|A|423
9HA4|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains