J4_9HA6_001

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HA6|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA6_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1633

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|C|268
9HA6|1|A|C|269
*
9HA6|1|A|G|370
9HA6|1|A|A|371
9HA6|1|A|G|372
9HA6|1|A|U|373
9HA6|1|A|A|374
9HA6|1|A|G|375
*
9HA6|1|A|U|399
9HA6|1|A|G|400
9HA6|1|A|A|401
9HA6|1|A|A|402
9HA6|1|A|U|403
9HA6|1|A|A|404
9HA6|1|A|U|405
9HA6|1|A|G|406
*
9HA6|1|A|C|421
9HA6|1|A|A|422
9HA6|1|A|A|423
9HA6|1|A|G|424

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28