J4_9HA6_008

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9HA6|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA6_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.2235

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9HA6|1|A|C|1833
9HA6|1|A|U|1834
9HA6|1|A|G|1835
*
9HA6|1|A|C|1905
9HA6|1|A|G|1906
*
9HA6|1|A|C|1924
9HA6|1|A|C|1925
9HA6|1|A|U|1926
9HA6|1|A|A|1927
9HA6|1|A|A|1928
9HA6|1|A|G|1929
9HA6|1|A|G|1930
9HA6|1|A|U|1931
9HA6|1|A|A|1932
9HA6|1|A|G|1933
*
9HA6|1|A|C|1967
9HA6|1|A|G|1968
9HA6|1|A|A|1969
9HA6|1|A|A|1970
9HA6|1|A|U|1971
9HA6|1|A|G|1972

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2