J4_9HA6_010

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA6_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1719

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9HA6|1|A|G|2643
9HA6|1|A|G|2644
9HA6|1|A|G|2645
9HA6|1|A|C|2646
*
9HA6|1|A|G|2674
9HA6|1|A|A|2675
9HA6|1|A|C|2676
*
9HA6|1|A|G|2731
9HA6|1|A|G|2732
9HA6|1|A|A|2733
9HA6|1|A|A|2734
9HA6|1|A|G|2735
*
9HA6|1|A|U|2769
9HA6|1|A|G|2770
9HA6|1|A|C|2771

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13

Chain K

Large ribosomal subunit protein uL14