J4_9HA7_007

3D structure

PDB id

9HA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.37 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

9HA7|1|A|A|2288

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA7_007 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1928

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

9HA7|1|A|C|2285
9HA7|1|A|G|2286
9HA7|1|A|A|2287
9HA7|1|A|A|2288
9HA7|1|A|G|2289
*
9HA7|1|A|U|2343
9HA7|1|A|U|2344
9HA7|1|A|G|2345
9HA7|1|A|A|2346
9HA7|1|A|C|2347
*
9HA7|1|A|G|2370
9HA7|1|A|G|2371
9HA7|1|A|U|2372
*
9HA7|1|A|A|2381
9HA7|1|A|G|2382
9HA7|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL18

Chain W

Large ribosomal subunit protein bL27