J4_9HAL_001

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HAL|1|A|A|404, 9HAL|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4998

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HAL|1|A|C|268
9HAL|1|A|C|269
*
9HAL|1|A|G|370
9HAL|1|A|A|371
9HAL|1|A|G|372
9HAL|1|A|U|373
9HAL|1|A|A|374
9HAL|1|A|G|375
*
9HAL|1|A|U|399
9HAL|1|A|G|400
9HAL|1|A|A|401
9HAL|1|A|A|402
9HAL|1|A|U|403
9HAL|1|A|A|404
9HAL|1|A|U|405
9HAL|1|A|G|406
*
9HAL|1|A|C|421
9HAL|1|A|A|422
9HAL|1|A|A|423
9HAL|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains