J4_9HAM_001

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HAM|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAM_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4434

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HAM|1|A|C|268
9HAM|1|A|C|269
*
9HAM|1|A|G|370
9HAM|1|A|A|371
9HAM|1|A|G|372
9HAM|1|A|U|373
9HAM|1|A|A|374
9HAM|1|A|G|375
*
9HAM|1|A|U|399
9HAM|1|A|G|400
9HAM|1|A|A|401
9HAM|1|A|A|402
9HAM|1|A|U|403
9HAM|1|A|A|404
9HAM|1|A|U|405
9HAM|1|A|G|406
*
9HAM|1|A|C|421
9HAM|1|A|A|422
9HAM|1|A|A|423
9HAM|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains