J4_9HAM_004

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9HAM|1|A|G|1271, 9HAM|1|A|A|1272, 9HAM|1|A|U|1273, 9HAM|1|A|U|1647

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAM_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.2699

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9HAM|1|A|C|1270
9HAM|1|A|G|1271
9HAM|1|A|A|1272
9HAM|1|A|U|1273
9HAM|1|A|A|1274
9HAM|1|A|A|1275
9HAM|1|A|A|1276
*
9HAM|1|A|U|1294
9HAM|1|A|C|1295
*
9HAM|1|A|G|1645
9HAM|1|A|C|1646
9HAM|1|A|U|1647
9HAM|1|A|U|1648
*
9HAM|1|A|A|2009
9HAM|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17