J4_9HAM_005

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9HAM|1|A|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAM_005 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.3161

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9HAM|1|A|G|1310
9HAM|1|A|G|1311
9HAM|1|A|U|1312
9HAM|1|A|U|1313
9HAM|1|A|C|1314
*
9HAM|1|A|G|1338
9HAM|1|A|G|1339
9HAM|1|A|U|1340
9HAM|1|A|G|1341
9HAM|1|A|A|1342
9HAM|1|A|G|1343
*
9HAM|1|A|C|1404
9HAM|1|A|U|1405
*
9HAM|1|A|A|1597
9HAM|1|A|A|1598
9HAM|1|A|U|1599
9HAM|1|A|C|1600
9HAM|1|A|G|1601
9HAM|1|A|U|1602
9HAM|1|A|A|1603
9HAM|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains