J4_9HM0_003

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAA*UC*GAAU*AG

Length

14 nucleotides

Bulged bases

9HM0|1|AA|G|1304, 9HM0|1|AA|A|1305, 9HM0|1|AA|A|1307, 9HM0|1|AA|A|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HM0_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.5579

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9HM0|1|AA|C|1303
9HM0|1|AA|G|1304
9HM0|1|AA|A|1305
9HM0|1|AA|A|1306
9HM0|1|AA|A|1307
9HM0|1|AA|A|1308
*
9HM0|1|AA|U|1325
9HM0|1|AA|C|1326
*
9HM0|1|AA|G|1597
9HM0|1|AA|A|1598
9HM0|1|AA|A|1599
9HM0|1|AA|U|1600
*
9HM0|1|AA|A|1909
9HM0|1|AA|G|1910

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain LL

Large ribosomal subunit protein bL17m

Chain OO

Large ribosomal subunit protein uL22m

Chain WW

Large ribosomal subunit protein bL32m

Chain dd

Large ribosomal subunit protein mL67