J4_9HM0_008
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAGUAAUUU*AU*AUAA*UC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9HM0_008 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.2271
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9HM0|1|r|G|115
9HM0|1|r|A|116
9HM0|1|r|G|117
9HM0|1|r|U|118
9HM0|1|r|A|119
9HM0|1|r|A|120
9HM0|1|r|U|121
9HM0|1|r|U|122
9HM0|1|r|U|123
*
9HM0|1|r|A|243
9HM0|1|r|U|244
*
9HM0|1|r|A|291
9HM0|1|r|U|292
9HM0|1|r|A|293
9HM0|1|r|A|294
*
9HM0|1|r|U|317
9HM0|1|r|C|318
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16m
- Chain Q
- Small ribosomal subunit protein uS17m
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