J4_9HUS_001

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HUS|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HUS_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.3055

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9HUS|1|b|C|268
9HUS|1|b|C|269
*
9HUS|1|b|G|370
9HUS|1|b|A|371
9HUS|1|b|G|372
9HUS|1|b|U|373
9HUS|1|b|A|374
9HUS|1|b|G|375
*
9HUS|1|b|U|399
9HUS|1|b|G|400
9HUS|1|b|A|401
9HUS|1|b|A|402
9HUS|1|b|U|403
9HUS|1|b|A|404
9HUS|1|b|U|405
9HUS|1|b|G|406
*
9HUS|1|b|C|421
9HUS|1|b|A|422
9HUS|1|b|A|423
9HUS|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain h

Large ribosomal subunit protein bL9