J4_9HY6_011
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9HY6|1|b|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9HY6_011 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.309
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9HY6|1|b|C|2285
9HY6|1|b|G|2286
9HY6|1|b|A|2287
9HY6|1|b|A|2288
9HY6|1|b|G|2289
*
9HY6|1|b|U|2343
9HY6|1|b|U|2344
9HY6|1|b|G|2345
9HY6|1|b|A|2346
9HY6|1|b|C|2347
*
9HY6|1|b|G|2370
9HY6|1|b|G|2371
9HY6|1|b|U|2372
*
9HY6|1|b|A|2381
9HY6|1|b|G|2382
9HY6|1|b|G|2383
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain o
- Large ribosomal subunit protein uL18
- Chain y
- Large ribosomal subunit protein bL27
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