J4_9HYM_011
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9HYM|1|b|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9HYM_011 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.309
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9HYM|1|b|C|2285
9HYM|1|b|G|2286
9HYM|1|b|A|2287
9HYM|1|b|A|2288
9HYM|1|b|G|2289
*
9HYM|1|b|U|2343
9HYM|1|b|U|2344
9HYM|1|b|G|2345
9HYM|1|b|A|2346
9HYM|1|b|C|2347
*
9HYM|1|b|G|2370
9HYM|1|b|G|2371
9HYM|1|b|U|2372
*
9HYM|1|b|A|2381
9HYM|1|b|G|2382
9HYM|1|b|G|2383
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain o
- Large ribosomal subunit protein uL18
- Chain y
- Large ribosomal subunit protein bL27
Coloring options: