J4_9I3L_003

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I3L_003 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1073

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9I3L|1|b|G|297
9I3L|1|b|G|298
9I3L|1|b|A|299
9I3L|1|b|A|300
9I3L|1|b|G|301
*
9I3L|1|b|C|316
9I3L|1|b|G|317
9I3L|1|b|C|318
9I3L|1|b|G|319
*
9I3L|1|b|C|323
9I3L|1|b|A|324
9I3L|1|b|G|325
*
9I3L|1|b|C|337
9I3L|1|b|G|338
9I3L|1|b|U|339
9I3L|1|b|A|340
9I3L|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain u

Large ribosomal subunit protein uL24