J4_9I3L_007

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9I3L|1|b|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I3L_007 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.233

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9I3L|1|b|U|1315
9I3L|1|b|C|1316
*
9I3L|1|b|G|1340
9I3L|1|b|G|1341
9I3L|1|b|U|1342
9I3L|1|b|G|1343
9I3L|1|b|A|1344
9I3L|1|b|G|1345
*
9I3L|1|b|C|1406
9I3L|1|b|U|1407
*
9I3L|1|b|A|1599
9I3L|1|b|A|1600
9I3L|1|b|U|1601
9I3L|1|b|C|1602
9I3L|1|b|G|1603
9I3L|1|b|U|1604
9I3L|1|b|A|1605

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23