J4_9I3L_009

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I3L_009 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0751

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9I3L|1|b|A|1774
9I3L|1|b|A|1775
9I3L|1|b|C|1776
9I3L|1|b|U|1777
9I3L|1|b|G|1778
*
9I3L|1|b|C|1790
9I3L|1|b|A|1791
9I3L|1|b|C|1792
9I3L|1|b|A|1793
9I3L|1|b|G|1794
*
9I3L|1|b|U|1829
9I3L|1|b|G|1830
9I3L|1|b|A|1831
9I3L|1|b|C|1832
*
9I3L|1|b|G|1979
9I3L|1|b|U|1980
9I3L|1|b|A|1981
9I3L|1|b|A|1982
9I3L|1|b|U|1983

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2