J4_9I88_008

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I88_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0684

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9I88|1|A|G|1799
9I88|1|A|A|1800
9I88|1|A|C|1801
9I88|1|A|U|1802
9I88|1|A|G|1803
*
9I88|1|A|C|1815
9I88|1|A|A|1816
9I88|1|A|C|1817
9I88|1|A|A|1818
9I88|1|A|G|1819
*
9I88|1|A|U|1854
9I88|1|A|G|1855
9I88|1|A|A|1856
9I88|1|A|C|1857
*
9I88|1|A|G|2002
9I88|1|A|U|2003
9I88|1|A|A|2004
9I88|1|A|A|2005
9I88|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2