J4_9J1M_008
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9J1M|1|A|A|2526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9J1M_008 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.0777
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9J1M|1|A|C|2523
9J1M|1|A|A|2524
9J1M|1|A|A|2525
9J1M|1|A|A|2526
9J1M|1|A|G|2527
*
9J1M|1|A|U|2581
9J1M|1|A|U|2582
9J1M|1|A|G|2583
9J1M|1|A|A|2584
9J1M|1|A|C|2585
*
9J1M|1|A|G|2608
9J1M|1|A|G|2609
9J1M|1|A|G|2610
*
9J1M|1|A|C|2619
9J1M|1|A|G|2620
9J1M|1|A|G|2621
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33A
- Chain 3
- Large ribosomal subunit protein bL35
- Chain O
- Large ribosomal subunit protein uL18
- Chain W
- Large ribosomal subunit protein bL27
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