J4_9JMK_002

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JMK_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1357

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9JMK|1|A|G|297
9JMK|1|A|G|298
9JMK|1|A|A|299
9JMK|1|A|A|300
9JMK|1|A|G|301
*
9JMK|1|A|C|316
9JMK|1|A|G|317
9JMK|1|A|C|318
9JMK|1|A|G|319
*
9JMK|1|A|C|323
9JMK|1|A|A|324
9JMK|1|A|G|325
*
9JMK|1|A|C|337
9JMK|1|A|G|338
9JMK|1|A|U|339
9JMK|1|A|A|340
9JMK|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24