J4_9JPO_006

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9JPO|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPO_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2564

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9JPO|1|a|C|268
9JPO|1|a|C|269
*
9JPO|1|a|G|370
9JPO|1|a|A|371
9JPO|1|a|G|372
9JPO|1|a|U|373
9JPO|1|a|A|374
9JPO|1|a|G|375
*
9JPO|1|a|U|399
9JPO|1|a|G|400
9JPO|1|a|A|401
9JPO|1|a|A|402
9JPO|1|a|U|403
9JPO|1|a|A|404
9JPO|1|a|U|405
9JPO|1|a|G|406
*
9JPO|1|a|C|421
9JPO|1|a|A|422
9JPO|1|a|A|423
9JPO|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28