J4_9JPO_009

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9JPO|1|a|G|1271, 9JPO|1|a|A|1272, 9JPO|1|a|U|1273, 9JPO|1|a|A|1275, 9JPO|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JPO_009 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1385

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9JPO|1|a|C|1270
9JPO|1|a|G|1271
9JPO|1|a|A|1272
9JPO|1|a|U|1273
9JPO|1|a|A|1274
9JPO|1|a|A|1275
9JPO|1|a|A|1276
*
9JPO|1|a|U|1294
9JPO|1|a|C|1295
*
9JPO|1|a|G|1645
9JPO|1|a|C|1646
9JPO|1|a|U|1647
9JPO|1|a|U|1648
*
9JPO|1|a|A|2009
9JPO|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32