J4_9MKK_007

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|a|C|601
9MKK|1|a|A|602
9MKK|1|a|A|603
9MKK|1|a|G|604
*
9MKK|1|a|C|624
9MKK|1|a|G|625
9MKK|1|a|A|626
9MKK|1|a|A|627
9MKK|1|a|G|628
*
9MKK|1|a|C|635
9MKK|1|a|G|636
9MKK|1|a|A|637
9MKK|1|a|G|638
*
9MKK|1|a|C|650
9MKK|1|a|G|651
9MKK|1|a|U|652
9MKK|1|a|U|653
9MKK|1|a|A|654
9MKK|1|a|A|655
9MKK|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15