3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
9MTP|1|2A|A|2288, 9MTP|1|2A|G|2382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9MTP|1|2A|C|2285
9MTP|1|2A|A|2286
9MTP|1|2A|A|2287
9MTP|1|2A|A|2288
9MTP|1|2A|G|2289
*
9MTP|1|2A|C|2343
9MTP|1|2A|U|2344
9MTP|1|2A|G|2345
9MTP|1|2A|A|2346
9MTP|1|2A|C|2347
*
9MTP|1|2A|G|2370
9MTP|1|2A|G|2371
9MTP|1|2A|G|2372
*
9MTP|1|2A|C|2381
9MTP|1|2A|G|2382
9MTP|1|2A|G|2383

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 26
50S ribosomal protein L33
Chain 28
50S ribosomal protein L35
Chain 2S
50S ribosomal protein L18

Coloring options:

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