J4_9N2B_011

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9N2B_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0424

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9N2B|1|23|A|1772
9N2B|1|23|A|1773
9N2B|1|23|C|1774
9N2B|1|23|U|1775
9N2B|1|23|G|1776
*
9N2B|1|23|C|1788
9N2B|1|23|A|1789
9N2B|1|23|C|1790
9N2B|1|23|A|1791
9N2B|1|23|G|1792
*
9N2B|1|23|U|1827
9N2B|1|23|G|1828
9N2B|1|23|A|1829
9N2B|1|23|C|1830
*
9N2B|1|23|G|1975
9N2B|1|23|U|1976
9N2B|1|23|A|1977
9N2B|1|23|A|1978
9N2B|1|23|U|1979

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2