3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
9N2B|1|23|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9N2B_013 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.0649
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

9N2B|1|23|C|2285
9N2B|1|23|G|2286
9N2B|1|23|A|2287
9N2B|1|23|A|2288
9N2B|1|23|G|2289
*
9N2B|1|23|U|2343
9N2B|1|23|U|2344
9N2B|1|23|G|2345
9N2B|1|23|A|2346
9N2B|1|23|C|2347
*
9N2B|1|23|G|2370
9N2B|1|23|G|2371
9N2B|1|23|U|2372
*
9N2B|1|23|A|2381
9N2B|1|23|G|2382
9N2B|1|23|G|2383

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LR
50S ribosomal protein L18
Chain La
50S ribosomal protein L27
Chain Lg
50S ribosomal protein L33
Chain Li
50S ribosomal protein L35

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5801 s