J4_9NDP_005

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9NDP|1|5|A|2366, 9NDP|1|5|U|2369, 9NDP|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|C|2365
9NDP|1|5|A|2366
9NDP|1|5|A|2367
9NDP|1|5|A|2368
9NDP|1|5|U|2369
9NDP|1|5|A|2370
9NDP|1|5|U|2371
*
9NDP|1|5|A|2389
9NDP|1|5|G|2390
9NDP|1|5|G|2391
*
9NDP|1|5|C|2824
9NDP|1|5|A|2825
9NDP|1|5|U|2826
9NDP|1|5|G|2827
9NDP|1|5|U|2828
9NDP|1|5|U|2829
*
9NDP|1|5|A|3856
9NDP|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain EF

Isoform 2 of Transcription factor BTF3

Chain P

Large ribosomal subunit protein uL22

Chain R

Ribosomal protein L19

Chain d

eL31