J4_9NDP_010
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9NDP|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NDP_010 not in the Motif Atlas
- Homologous match to J4_8GLP_010
- Geometric discrepancy: 0.1533
- The information below is about J4_8GLP_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_21738.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 3
Unit IDs
9NDP|1|5|C|3696
9NDP|1|5|U|3697
9NDP|1|5|G|3698
*
9NDP|1|5|C|3752
9NDP|1|5|G|3753
*
9NDP|1|5|C|3771
9NDP|1|5|U|3772
9NDP|1|5|U|3773
9NDP|1|5|A|3774
9NDP|1|5|A|3775
9NDP|1|5|G|3776
9NDP|1|5|G|3777
9NDP|1|5|U|3778
9NDP|1|5|A|3779
9NDP|1|5|G|3780
*
9NDP|1|5|U|3814
9NDP|1|5|G|3815
9NDP|1|5|A|3816
9NDP|1|5|A|3817
9NDP|1|5|U|3818
9NDP|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
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