J4_9NDP_013

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9NDP|1|K|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NDP_013 not in the Motif Atlas

Homologous match to J4_9PN5_010

Geometric discrepancy: 0.1642

The information below is about J4_9PN5_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.4

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

4

Unit IDs

9NDP|1|K|C|98
9NDP|1|K|A|99
9NDP|1|K|U|100
9NDP|1|K|U|101
9NDP|1|K|A|102
9NDP|1|K|A|103
9NDP|1|K|A|104
9NDP|1|K|U|105
9NDP|1|K|C|106
*
9NDP|1|K|G|355
9NDP|1|K|C|356
9NDP|1|K|C|357
*
9NDP|1|K|G|405
9NDP|1|K|U|406
9NDP|1|K|G|407
9NDP|1|K|A|408
9NDP|1|K|C|409
*
9NDP|1|K|G|431
9NDP|1|K|G|432

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11

Chain VV

uS12

Chain x

eS4