J4_9NJF_007

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJF_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0711

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|A|1772
9NJF|1|R1|A|1773
9NJF|1|R1|C|1774
9NJF|1|R1|U|1775
9NJF|1|R1|G|1776
*
9NJF|1|R1|C|1788
9NJF|1|R1|A|1789
9NJF|1|R1|C|1790
9NJF|1|R1|A|1791
9NJF|1|R1|G|1792
*
9NJF|1|R1|U|1827
9NJF|1|R1|G|1828
9NJF|1|R1|A|1829
9NJF|1|R1|C|1830
*
9NJF|1|R1|G|1975
9NJF|1|R1|U|1976
9NJF|1|R1|A|1977
9NJF|1|R1|A|1978
9NJF|1|R1|U|1979

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA