J4_9NJV_002

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9NJV|1|R1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJV_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2262

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NJV|1|R1|C|268
9NJV|1|R1|C|269
*
9NJV|1|R1|G|370
9NJV|1|R1|A|371
9NJV|1|R1|G|372
9NJV|1|R1|U|373
9NJV|1|R1|A|374
9NJV|1|R1|G|375
*
9NJV|1|R1|U|399
9NJV|1|R1|G|400
9NJV|1|R1|A|401
9NJV|1|R1|A|402
9NJV|1|R1|U|403
9NJV|1|R1|A|404
9NJV|1|R1|U|405
9NJV|1|R1|G|406
*
9NJV|1|R1|C|421
9NJV|1|R1|A|422
9NJV|1|R1|A|423
9NJV|1|R1|G|424

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9