J4_9NJV_004

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9NJV|1|R1|G|1271, 9NJV|1|R1|A|1272, 9NJV|1|R1|U|1273, 9NJV|1|R1|A|1274, 9NJV|1|R1|C|1646, 9NJV|1|R1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJV_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1043

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9NJV|1|R1|C|1270
9NJV|1|R1|G|1271
9NJV|1|R1|A|1272
9NJV|1|R1|U|1273
9NJV|1|R1|A|1274
9NJV|1|R1|A|1275
9NJV|1|R1|A|1276
*
9NJV|1|R1|U|1294
9NJV|1|R1|C|1295
*
9NJV|1|R1|G|1645
9NJV|1|R1|C|1646
9NJV|1|R1|U|1647
9NJV|1|R1|U|1648
*
9NJV|1|R1|A|2009
9NJV|1|R1|G|2010

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32