J4_9NJV_012

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9NJV|1|R3|C|183, 9NJV|1|R3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NJV_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1781

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9NJV|1|R3|G|142
9NJV|1|R3|A|143
9NJV|1|R3|G|144
*
9NJV|1|R3|C|178
9NJV|1|R3|A|179
9NJV|1|R3|U|180
9NJV|1|R3|A|181
9NJV|1|R3|A|182
9NJV|1|R3|C|183
9NJV|1|R3|G|184
*
9NJV|1|R3|C|193
9NJV|1|R3|C|194
9NJV|1|R3|A|195
9NJV|1|R3|A|196
9NJV|1|R3|A|197
9NJV|1|R3|G|198
*
9NJV|1|R3|U|219
9NJV|1|R3|G|220
9NJV|1|R3|C|221

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20