3D structure

PDB id
9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
9NL7|1|R1|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9NL7_009 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1044
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

9NL7|1|R1|C|2285
9NL7|1|R1|G|2286
9NL7|1|R1|A|2287
9NL7|1|R1|A|2288
9NL7|1|R1|G|2289
*
9NL7|1|R1|U|2343
9NL7|1|R1|U|2344
9NL7|1|R1|G|2345
9NL7|1|R1|A|2346
9NL7|1|R1|C|2347
*
9NL7|1|R1|G|2370
9NL7|1|R1|G|2371
9NL7|1|R1|U|2372
*
9NL7|1|R1|A|2381
9NL7|1|R1|G|2382
9NL7|1|R1|G|2383

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 18
Large ribosomal subunit protein uL18
Chain 27
50S ribosomal protein L27
Chain 33
Large ribosomal subunit protein bL33
Chain 35
Large ribosomal subunit protein bL35

Coloring options:


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