J4_9NLB_008

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLB_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0659

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NLB|1|R1|A|1772
9NLB|1|R1|A|1773
9NLB|1|R1|C|1774
9NLB|1|R1|U|1775
9NLB|1|R1|G|1776
*
9NLB|1|R1|C|1788
9NLB|1|R1|A|1789
9NLB|1|R1|C|1790
9NLB|1|R1|A|1791
9NLB|1|R1|G|1792
*
9NLB|1|R1|U|1827
9NLB|1|R1|G|1828
9NLB|1|R1|A|1829
9NLB|1|R1|C|1830
*
9NLB|1|R1|G|1975
9NLB|1|R1|U|1976
9NLB|1|R1|A|1977
9NLB|1|R1|A|1978
9NLB|1|R1|U|1979

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2