J4_9NLH_007

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLH_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0673

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NLH|1|R1|A|1772
9NLH|1|R1|A|1773
9NLH|1|R1|C|1774
9NLH|1|R1|U|1775
9NLH|1|R1|G|1776
*
9NLH|1|R1|C|1788
9NLH|1|R1|A|1789
9NLH|1|R1|C|1790
9NLH|1|R1|A|1791
9NLH|1|R1|G|1792
*
9NLH|1|R1|U|1827
9NLH|1|R1|G|1828
9NLH|1|R1|A|1829
9NLH|1|R1|C|1830
*
9NLH|1|R1|G|1975
9NLH|1|R1|U|1976
9NLH|1|R1|A|1977
9NLH|1|R1|A|1978
9NLH|1|R1|U|1979

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2