J4_9NLH_009

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

9NLH|1|R1|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLH_009 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1296

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

9NLH|1|R1|C|2285
9NLH|1|R1|G|2286
9NLH|1|R1|A|2287
9NLH|1|R1|A|2288
9NLH|1|R1|G|2289
*
9NLH|1|R1|U|2343
9NLH|1|R1|U|2344
9NLH|1|R1|G|2345
9NLH|1|R1|A|2346
9NLH|1|R1|C|2347
*
9NLH|1|R1|G|2370
9NLH|1|R1|G|2371
9NLH|1|R1|U|2372
*
9NLH|1|R1|A|2381
9NLH|1|R1|G|2382
9NLH|1|R1|G|2383

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18

Chain 27

50S ribosomal protein L27

Chain 33

Large ribosomal subunit protein bL33

Chain 35

Large ribosomal subunit protein bL35