J4_9NLJ_010

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

9NLJ|1|R1|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLJ_010 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1137

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

9NLJ|1|R1|C|2285
9NLJ|1|R1|G|2286
9NLJ|1|R1|A|2287
9NLJ|1|R1|A|2288
9NLJ|1|R1|G|2289
*
9NLJ|1|R1|U|2343
9NLJ|1|R1|U|2344
9NLJ|1|R1|G|2345
9NLJ|1|R1|A|2346
9NLJ|1|R1|C|2347
*
9NLJ|1|R1|G|2370
9NLJ|1|R1|G|2371
9NLJ|1|R1|U|2372
*
9NLJ|1|R1|A|2381
9NLJ|1|R1|G|2382
9NLJ|1|R1|G|2383

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18

Chain 27

Large ribosomal subunit protein bL27

Chain 33

Large ribosomal subunit protein bL33

Chain 35

Large ribosomal subunit protein bL35

Chain U

Uup