J4_9NLQ_007
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NLQ_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.067
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NLQ|1|R1|A|1772
9NLQ|1|R1|A|1773
9NLQ|1|R1|C|1774
9NLQ|1|R1|U|1775
9NLQ|1|R1|G|1776
*
9NLQ|1|R1|C|1788
9NLQ|1|R1|A|1789
9NLQ|1|R1|C|1790
9NLQ|1|R1|A|1791
9NLQ|1|R1|G|1792
*
9NLQ|1|R1|U|1827
9NLQ|1|R1|G|1828
9NLQ|1|R1|A|1829
9NLQ|1|R1|C|1830
*
9NLQ|1|R1|G|1975
9NLQ|1|R1|U|1976
9NLQ|1|R1|A|1977
9NLQ|1|R1|A|1978
9NLQ|1|R1|U|1979
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L2
Coloring options: