J4_9NLS_007

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLS_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0725

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NLS|1|R1|A|1772
9NLS|1|R1|A|1773
9NLS|1|R1|C|1774
9NLS|1|R1|U|1775
9NLS|1|R1|G|1776
*
9NLS|1|R1|C|1788
9NLS|1|R1|A|1789
9NLS|1|R1|C|1790
9NLS|1|R1|A|1791
9NLS|1|R1|G|1792
*
9NLS|1|R1|U|1827
9NLS|1|R1|G|1828
9NLS|1|R1|A|1829
9NLS|1|R1|C|1830
*
9NLS|1|R1|G|1975
9NLS|1|R1|U|1976
9NLS|1|R1|A|1977
9NLS|1|R1|A|1978
9NLS|1|R1|U|1979

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2