J4_9NO7_003
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 9NO7|1|A|G|1271, 9NO7|1|A|A|1272, 9NO7|1|A|U|1273, 9NO7|1|A|A|1275, 9NO7|1|A|G|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9NO7_003 not in the Motif Atlas
- Homologous match to J4_8B0X_007
- Geometric discrepancy: 0.1046
- The information below is about J4_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.2
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
9NO7|1|A|C|1270
9NO7|1|A|G|1271
9NO7|1|A|A|1272
9NO7|1|A|U|1273
9NO7|1|A|A|1274
9NO7|1|A|A|1275
9NO7|1|A|A|1276
*
9NO7|1|A|U|1294
9NO7|1|A|C|1295
*
9NO7|1|A|G|1645
9NO7|1|A|C|1646
9NO7|1|A|G|1647
9NO7|1|A|C|1648
*
9NO7|1|A|G|2009
9NO7|1|A|G|2010
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain R
- 50S ribosomal protein L17
- Chain W
- 50S ribosomal protein L22
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