J4_9OFV_001

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

9OFV|1|f|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OFV|1|f|U|112
9OFV|1|f|C|113
*
9OFV|1|f|G|267
9OFV|1|f|A|268
9OFV|1|f|G|269
9OFV|1|f|U|270
9OFV|1|f|C|271
9OFV|1|f|G|272
*
9OFV|1|f|C|293
9OFV|1|f|U|294
9OFV|1|f|A|295
9OFV|1|f|A|296
9OFV|1|f|G|297
9OFV|1|f|U|298
9OFV|1|f|G|299
*
9OFV|1|f|U|316
9OFV|1|f|A|317
9OFV|1|f|A|318
9OFV|1|f|A|319

Current chains

Chain f

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L35-A

Chain V

60S ribosomal protein L36-A

Chain t

60S ribosomal protein L13-A