J4_9OGY_001

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9OGY|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|98
9OGY|1|2|A|99
9OGY|1|2|U|100
9OGY|1|2|U|101
9OGY|1|2|A|102
9OGY|1|2|A|103
9OGY|1|2|A|104
9OGY|1|2|U|105
9OGY|1|2|C|106
*
9OGY|1|2|G|355
9OGY|1|2|C|356
9OGY|1|2|C|357
*
9OGY|1|2|G|405
9OGY|1|2|U|406
9OGY|1|2|G|407
9OGY|1|2|A|408
9OGY|1|2|C|409
*
9OGY|1|2|G|431
9OGY|1|2|G|432

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

40S ribosomal protein S8

Chain M

Ribosomal protein S11

Chain Y

uS12