J4_9P79_005
3D structure
- PDB id
- 9P79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9P79|1|L5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9P79_005 not in the Motif Atlas
- Homologous match to J4_9PN5_004
- Geometric discrepancy: 0.0765
- The information below is about J4_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.2
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9P79|1|L5|G|2406
9P79|1|L5|G|2407
9P79|1|L5|U|2408
9P79|1|L5|U|2409
9P79|1|L5|C|2410
*
9P79|1|L5|G|2434
9P79|1|L5|G|2435
9P79|1|L5|U|2436
9P79|1|L5|C|2437
9P79|1|L5|A|2438
9P79|1|L5|G|2439
*
9P79|1|L5|U|2538
9P79|1|L5|C|2539
*
9P79|1|L5|G|2777
9P79|1|L5|G|2778
9P79|1|L5|C|2779
9P79|1|L5|C|2780
9P79|1|L5|G|2781
9P79|1|L5|U|2782
9P79|1|L5|A|2783
9P79|1|L5|C|2784
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CA
- Proliferation-associated protein 2G4
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
Coloring options: