J4_9PGL_008
3D structure
- PDB id
- 9PGL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P state with TACO1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9PGL|1|AA|A|942, 9PGL|1|AA|A|1103, 9PGL|1|AA|C|1106, 9PGL|1|AA|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PGL_008 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.3357
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PGL|1|AA|G|941
9PGL|1|AA|A|942
9PGL|1|AA|G|943
*
9PGL|1|AA|C|1052
9PGL|1|AA|A|1053
9PGL|1|AA|A|1054
9PGL|1|AA|U|1055
9PGL|1|AA|A|1056
9PGL|1|AA|G|1057
*
9PGL|1|AA|C|1098
9PGL|1|AA|C|1099
9PGL|1|AA|C|1100
9PGL|1|AA|U|1101
9PGL|1|AA|A|1102
9PGL|1|AA|A|1103
9PGL|1|AA|A|1104
9PGL|1|AA|C|1105
9PGL|1|AA|C|1106
9PGL|1|AA|U|1107
9PGL|1|AA|C|1108
9PGL|1|AA|A|1109
*
9PGL|1|AA|U|1132
9PGL|1|AA|C|1133
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A2
- Small ribosomal subunit protein mS37
- Chain A3
- Aurora kinase A-interacting protein
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AQ
- Small ribosomal subunit protein bS21m
- Chain AT
- 28S ribosomal protein S25, mitochondrial
Coloring options: