J4_9PIH_005

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9PIH|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PIH_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2473

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9PIH|1|a|C|268
9PIH|1|a|C|269
*
9PIH|1|a|G|370
9PIH|1|a|A|371
9PIH|1|a|G|372
9PIH|1|a|U|373
9PIH|1|a|A|374
9PIH|1|a|G|375
*
9PIH|1|a|U|399
9PIH|1|a|G|400
9PIH|1|a|A|401
9PIH|1|a|A|402
9PIH|1|a|U|403
9PIH|1|a|A|404
9PIH|1|a|U|405
9PIH|1|a|G|406
*
9PIH|1|a|C|421
9PIH|1|a|A|422
9PIH|1|a|A|423
9PIH|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28