J4_9PII_005

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9PII|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PII_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2535

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9PII|1|a|C|268
9PII|1|a|C|269
*
9PII|1|a|G|370
9PII|1|a|A|371
9PII|1|a|G|372
9PII|1|a|U|373
9PII|1|a|A|374
9PII|1|a|G|375
*
9PII|1|a|U|399
9PII|1|a|G|400
9PII|1|a|A|401
9PII|1|a|A|402
9PII|1|a|U|403
9PII|1|a|A|404
9PII|1|a|U|405
9PII|1|a|G|406
*
9PII|1|a|C|421
9PII|1|a|A|422
9PII|1|a|A|423
9PII|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28